info: Database 'sdc_seq_cmp_read_len_corrupt.csra' metadata: md5 ok
info: Table 'PRIMARY_ALIGNMENT' metadata: md5 ok
info: Column 'GLOBAL_REF_START': md5 ok
info: Column 'HAS_MISMATCH': md5 ok
info: Column 'HAS_REF_OFFSET': md5 ok
info: Column 'MISMATCH': md5 ok
info: Column 'REF_LEN': md5 ok
info: Column 'REF_ORIENTATION': md5 ok
info: Column 'SEQ_READ_ID': md5 ok
info: Column 'SEQ_SPOT_ID': md5 ok
info: Table 'REFERENCE' metadata: md5 ok
info: Column 'CGRAPH_HIGH': md5 ok
info: Column 'CGRAPH_MISMATCHES': md5 ok
info: Column 'CS_KEY': md5 ok
info: Column 'OVERLAP_REF_POS': md5 ok
info: Column 'PRIMARY_ALIGNMENT_IDS': md5 ok
info: Column 'SECONDARY_ALIGNMENT_IDS': md5 ok
info: Column 'SEQ_LEN': md5 ok
info: Column 'SEQ_START': md5 ok
info: Table 'SECONDARY_ALIGNMENT' metadata: md5 ok
info: Column 'GLOBAL_REF_START': md5 ok
info: Column 'HAS_REF_OFFSET': md5 ok
info: Column 'MATE_REF_ORIENTATION': md5 ok
info: Column 'MATE_REF_POS': md5 ok
info: Column 'REF_LEN': md5 ok
info: Column 'REF_ORIENTATION': md5 ok
info: Column 'SEQ_READ_ID': md5 ok
info: Column 'SEQ_SPOT_ID': md5 ok
info: Column 'TEMPLATE_LEN': md5 ok
info: Column 'TMP_HAS_MISMATCH': md5 ok
info: Column 'TMP_MISMATCH': md5 ok
info: Table 'SEQUENCE' metadata: md5 ok
info: Column 'CMP_READ': md5 ok
info: Column 'PRIMARY_ALIGNMENT_ID': md5 ok
info: Column 'QUALITY': md5 ok
info: Column 'READ_LEN': md5 ok
info: Column 'READ_START': md5 ok
info: Column 'READ_TYPE': md5 ok
info: Column 'SPOT_GROUP': md5 ok
info: Database 'db/sdc_seq_cmp_read_len_corrupt.csra': SEQUENCE.PRIMARY_ALIGNMENT_ID <-> PRIMARY_ALIGNMENT.SEQ_SPOT_ID referential integrity ok
info: Database 'db/sdc_seq_cmp_read_len_corrupt.csra': REFERENCE.PRIMARY_ALIGNMENT_IDS <-> PRIMARY_ALIGNMENT.REF_ID referential integrity ok
warn: Database 'db/sdc_seq_cmp_read_len_corrupt.csra' has secondary alignments without primary
err: data inconsistent while validating database - Database 'db/sdc_seq_cmp_read_len_corrupt.csra': SEQUENCE:1 CMP_READ length (75) does not match sum of unaligned READ_LEN values (150)
err: data inconsistent while validating database - Database 'sdc_seq_cmp_read_len_corrupt.csra' check failed
