#
#  VTML200 
#
# This matrix was produced by scripts written by
# Kai Kneutgen and Tobias Mueller [Mai-2002]
#
# VTML200  substitution matrix, Units = Third-Bits 
#
# Expected Score = -1.038 Third-Bits
# Lowest Score   = -6.432
# Highest Score  = 15.127
# Entropy H      = 0.420 Bits
#
#
# For further information on the VTML substitution model, see 
#
#    Estimating Amino Acid Substitution Models:
#    A Comparison of Dayhoff's Estimator, the Resolvent Approach and a Maximum Likelihood Method.
#    T. Mueller, R. Spang and M. Vingron
#    Mol Biol Evol 19(1): 8-13. 2002. 
#
# or mail to
#    Tobias.Mueller@molgen.mpg.de
#
# The latest version of this perl script can be downloaded at 
#    http://www.molgen.mpg.de/~muelle_t
    A   R   N   D   C   Q   E   G   H   I   L   K   M   F   P   S   T   W   Y   V   B   Z   X   *
A   4  -2  -1  -1   1  -1  -1   0  -2  -1  -2  -1  -1  -3   0   1   1  -4  -3  0   -1  -1  -1  -6
R  -2   7   0  -2  -3   2  -1  -2   1  -3  -3   4  -2  -4  -1  -1  -1  -3  -2  -3  -1   0  -1  -6
N  -1   0   6   3  -2   1   1   0   1  -4  -4   1  -3  -4  -2   1   0  -5  -2  -3   4   1  -1  -6
D  -1  -2   3   6  -4   1   3  -1   0  -5  -5   0  -4  -6  -1   0  -1  -6  -4  -4   5   2  -2  -6
C   1  -3  -2  -4  12  -3  -4  -2  -2   0  -3  -4  -1  -3  -3   1   0  -6   0   1  -3  -4  -1  -6
Q  -1   2   1   1  -3   5   2  -2   2  -3  -2   2  -1  -3  -1   0   0  -6  -3  -2   1   4  -1  -6
E  -1  -1   1   3  -4   2   5  -1   0  -4  -4   1  -3  -5  -1   0  -1  -6  -3  -3   2   4  -1  -6
G   0  -2   0  -1  -2  -2  -1   8  -2  -6  -5  -2  -4  -5  -2   0  -2  -5  -5  -4   0  -2  -2  -6
H  -2   1   1   0  -2   2   0  -2   8  -3  -2   0  -3   0  -2   0  -1  -1   3  -3   1   1   0  -6
I  -1  -3  -4  -5   0  -3  -4  -6  -3   5   3  -3   2   0  -4  -3  -1  -2  -2   4  -4  -3  -1  -6
L  -2  -3  -4  -5  -3  -2  -4  -5  -2   3   5  -3   3   2  -3  -3  -2  -1  -1   2  -5  -3  -1  -6
K  -1   4   1   0  -4   2   1  -2   0  -3  -3   5  -2  -5  -1   0   0  -4  -3  -3   0   2  -1  -6
M  -1  -2  -3  -4  -1  -1  -3  -4  -3   2   3  -2   6   1  -3  -2  -1  -3  -2   2  -3  -2  -1  -6
F  -3  -4  -4  -6  -3  -3  -5  -5   0   0   2  -5   1   8  -4  -3  -3   3   5  -1  -5  -4  -1  -6
P   0  -1  -2  -1  -3  -1  -1  -2  -2  -4  -3  -1  -3  -4   9   0  -1  -4  -5  -3  -1  -1  -2  -6
S   1  -1   1   0   1   0   0   0   0  -3  -3   0  -2  -3   0   4   2  -4  -2  -2   1   0  -1  -6
T   1  -1   0  -1   0   0  -1  -2  -1  -1  -2   0  -1  -3  -1   2   4  -5  -3   0   0  -1  -1  -6
W  -4  -3  -5  -6  -6  -6  -6  -5  -1  -2  -1  -4  -3   3  -4  -4  -5  15   4  -4  -5  -6  -2  -6
Y  -3  -2  -2  -4   0  -3  -3  -5   3  -2  -1  -3  -2   5  -5  -2  -3   4   9  -2  -3  -3  -1  -6
V   0  -3  -3  -4   1  -2  -3  -4  -3   4   2  -3   2  -1  -3  -2   0  -4  -2   4  -3  -3  -1  -6
B  -1  -1   4   5  -3   1   2   0   1  -4  -5   0  -3  -5  -1   1   0  -5  -3  -3   4   1  -1  -6
Z  -1   0   1   2  -4   4   4  -2   1  -3  -3   2  -2  -4  -1   0  -1  -6  -3  -3   1   4  -1  -6
X  -1  -1  -1  -2  -1  -1  -1  -2   0  -1  -1  -1  -1  -1  -2  -1  -1  -2  -1  -1  -1  -1  -1  -6
*  -6  -6  -6  -6  -6  -6  -6  -6  -6  -6  -6  -6  -6  -6  -6  -6  -6  -6  -6  -6  -6  -6  -6   1
