Task: Molecular Mechanics
Description: DebiChem Molecular Mechanics
 This metapackage will install Molecular Mechanics
 which might be useful for chemists.

Depends: adun.app
Published-Title: Framework Based Design of a New All-Purpose Molecular Simulation Application: The Adun Simulator
Published-Authors: M.A. Johnston, I.F. Galván and J. Vill| -Freixa
Published-In: J. Comput. Chem. 26(15):1647-1659
Published-Year: 2005
Published-URL: http://www3.interscience.wiley.com/cgi-bin/abstract/112094040/ABSTRACT
Published-DOI: 10.1002/jcc.20312

Depends: avogadro

Depends: ghemical

Depends: gromacs

Depends: vmd
License: non-free
Homepage: http://www.ks.uiuc.edu/Research/vmd/
Vcs-Browser: http://svn.debian.org/wsvn/debichem/wnpp/vmd/
Vcs-Svn: svn://svn.debian.org/svn/debichem/wnpp/vmd/
Responsible: Michael Banck <mbanck@debian.org>, Steffen Moeller <moeller@debian.org>
Pkg-Description: presentation of traces of molecular dynamics runs
 VMD stands for Visual Molecular Dynamics. While text books
 and even structure databases because of technical problems only
 present static pictures of proteins or DNA, for the understanding
 of the properties of those molecules their vibration or their
 movement in general is important.
 .
 The movements itself are calculated by molecular dynamics programs,
 such as NAMD (by the same group), Rosetta, BALLView or GROMACS. The
 latter two are already in the distribution. VMD has a series of
 nice features, from displaying through animation to analysing.
 It can be scripted, clustered, and runs on all common OS..

